Ecommerce Accounting · Shopify

Accounting Software for Shopify

NeonPanel is accounting software for Shopify that combines landed cost, multi-location stock, processor fees, and financial reporting in one audit-ready ledger. Built as Shopify accounting software, NeonPanel automates order accounting, inventory costing, and batch-level COGS while keeping your financial records synchronized with QuickBooks or Xero.

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Shopify accounting software dashboard showing orders, payouts, refunds, and ledger sync

Trusted by 200+ Ecommerce Teams

In practice

NeonPanel Shopify Accounting on One Ledger

Shopify data flows into NeonPanel as structured settlements and orders. Inventory value stays aligned across warehouses and currencies — one ledger for stock, costs, and financial reporting.

Multi-Channel Sync

Shopify sales sit on the same inventory and accounting layer as Amazon, TikTok Shop, and your other channels.

Availability You Can Trust

On-hand, in-transit, and reserved stock across 3PLs and owned warehouses — without a parallel workbook.

Settlement-True Reporting

Fee classification, tax lines, and payout timing automate so leadership reads one settlement-true story.

Bank Matches the GL

Orders, processor fees, and payouts stay linked to the journals that sync — deposit and P&L agree.

Shopify Accounting Automation

Orders, payouts, taxes, and payment processor fees flow into one accounting workflow through a Shopify accounting integration, eliminating manual exports and spreadsheet imports.

  • Automatic journal creation — Sales, refunds, taxes, and payouts are converted into accounting entries automatically.
  • Processor fee mapping — Shopify Payments, Stripe, and PayPal fees post to the correct expense accounts.
  • Continuous financial sync — Journals, fees, and payouts stay synchronized with every Shopify transaction, helping finance teams close the books faster.
Shopify accounting software integration workflow
shopify accounting landed cost breakdown

True Profit Visibility

Built for growing Shopify brands, NeonPanel combines operational and financial data into one source of truth for accounting for Shopify stores.

  • Landed cost accuracy — Freight, duties, and service invoices roll into landed cost so order margin reflects procurement reality.
  • Payment reconciliation — Processor fees, taxes, and payouts remain linked to every order.
  • Direct sync — Validated journals push to Xero or QuickBooks on a continuous schedule finance can rely on.
  • Financial visibility — Profitability updates automatically as inventory costs and financial records change.
Feature highlights

Shopify-Specific Accounting Features

Order Sync

Orders carry revenue recognition, tax, and shipping lines as finance expects.

Automatic COGS

Batch-tracked COGS instead of blended averages—so unit economics stay tied to the receipts that earned them.

Automatic COGS

Payment Fee Tracking

Shopify Payments, PayPal, Stripe, and similar processors land in distinct fee accounts.

Refund Handling

Refunds post reversing entries with the same traceability as the original sale.

Multi-Location Tracking

Fulfilment source and 3PL locations feed cost allocation instead of a single blended warehouse rate.

Tax Compliance

Sales tax captured by jurisdiction with supporting lines for review.

Frequently Asked Questions

Close yesterday accurately, plan tomorrow with confidence

14-day free trial. No credit card. Dedicated onboarding on every plan — we set up your batches, your ledger, and your channels with you.

Join 200+ ecommerce teams who trust NeonPanel for their financial close.