Connect Shopify to QuickBooks Online

Connect Shopify to QuickBooks Online and automate your ecommerce accounting. NeonPanel organises every sale, fee, and COGS entry so you can close the month quickly and accurately.

Automatic sync of sales, fees, and inventory
Real-time financial data and reporting
Accurate COGS and profit margin tracking
No manual data entry required

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Shopify logo
QuickBooks logo
Accurate COGS
Automated calculation
Real-Time Sync
Continuous updates
Tax Compliant
Audit-ready books

Trusted by teams who need accuracy

Key Benefits

  • Automatic posting & categorization – Sales, shipping, refunds and sales taxes are automatically mapped to QuickBooks accounts.
  • Unified financial data – Consolidated transactions help you track margins, seasonality and channel performance.
  • Automatic COGS & inventory updates – NeonPanel updates stock quantities and COGS as orders are posted.
  • Customizable postings – Configure postings to match your chart of accounts and split sales accounts by country or channel.
  • Scalable automation – Handles high order volumes across multiple channels.
Amazon payout synced into Xero
Journal preview showing sales, fees and COGS
Split-by-country channel selector
How it works
1. Link your Shopify store and QuickBooks Online account.
2. Map your accounts and define how sales, fees and refunds should be allocated.
3. Import historical orders if needed.
4. NeonPanel posts transactions and COGS to QuickBooks automatically.

Outcomes

  • Faster month-end.
  • Trustworthy margins.
  • Fewer spreadsheets.
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Sync Everything

Catalogs

Including Products, Services, Customers, Vendors, and Currencies

Charts of Accounts

Use the default Chart of Accounts tailored for Amazon sellers or customize your own

Bills

Bills, purchase orders, and expenses synced in real-time

Invoices

Precise Cost of Goods Sold (COGS) calculated using the First-In, First-Out (FIFO) method

Flexible Pricing Plans

Choose the plan that fits your business needs

Essentials

Starting at $79 /month

Perfect for growing businesses

  • ✓ One Amazon Seller Account
  • ✓ Flexible Landed Cost Distribution
  • ✓ Automated COGS Calculations
  • ✓ QuickBooks & Xero Integration
  • ✓ Unlimited Users & Roles
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Frequently Asked Questions